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Current Issue

Volume 30 Issue 3: May 9, 2008                             

 

Included in this issue:

Tethering 9-1-1 to DNA activates the checkpoint in absence of damage

Cdc20 and Cks degrade cyclin A in mitosis

Regulation of estrogen receptor α by lysine methylation

Electron microscopy of 20S proteasome gate opening

Mechanism of Bak homodimerization to trigger apoptosis

Resource: PIP3-regulated PH domains


Immediate Early Publication

Marash et al. DAP5 Promotes Cap-Independent Translation of Bcl-2 and CDK1 to Facilitate Cell Survival during Mitosis

DAP5 is an eIF4G protein previously implicated in mediating cap-independent translation in response to cellular stresses. Here we report that DAP5 is crucial for continuous cell survival in nonstressed cells. The knockdown of endogenous DAP5 induced M phase-specific caspase-dependent apoptosis. Bcl-2 and CDK1 were identified by two independent screens as DAP5 translation targets. Notably, the activity of the Bcl-2 IRES was reduced in DAP5 knockdown cells and a selective shift of Bcl-2 mRNA toward light polysomal fractions was detected. Furthermore, a functional IRES was identified in the 5′UTR of CDK1. At the cellular level, attenuated translation of CDK1 by DAP5 knockdown decreased the phosphorylation of its M phase substrates. Ectopic expression of Bcl-2 or CDK1 proteins partially reduced the extent of caspase activation caused by DAP5 knockdown. Thus, DAP5 is necessary for maintaining cell survival during mitosis by promoting cap-independent translation of at least two prosurvival proteins.

Dai et al. A Three-Dimensional Model of a Group II Intron RNA and Its Interaction with the Intron-Encoded Reverse Transcriptase

Group II introns are self-splicing ribozymes believed to be the ancestors of spliceosomal introns. Many group II introns encode reverse transcriptases that promote both RNA splicing and intron mobility to new genomic sites. Here we used a circular permutation and crosslinking method to establish 16 intramolecular distance relationships within the mobile Lactococcus lactis Ll.LtrB-ΔORF intron. Using these new constraints together with 13 established tertiary interactions and eight published crosslinks, we modeled a complete three-dimensional structure of the intron. We also used the circular permutation strategy to map RNA-protein interaction sites through fluorescence quenching and crosslinking assays. Our model provides a comprehensive structural framework for understanding the function of group II ribozymes, their natural structural variations, and the mechanisms by which the intron-encoded protein promotes RNA splicing and intron mobility. The model also suggests an arrangement of active site elements that may be conserved in the spliceosome.

 

Featured Article

The Featured Article is freely available to all readers

Basak et al. The Metastasis-Associated Gene Prl-3 Is a p53 Target Involved in Cell-Cycle Regulation

The p53 tumor suppressor restricts tumorigenesis through the transcriptional activation of target genes involved in cell-cycle arrest and apoptosis. Here, we identify Prl-3 (phosphatase of regenerating liver-3) as a p53-inducible gene. Whereas previous studies implicated Prl-3 in metastasis because of its overexpression in metastatic human colorectal cancer and its ability to promote invasiveness and motility, we demonstrate here that Prl-3 is an important cell-cycle regulator. Consistent with a role in DNA damage-induced cell-cycle arrest, Prl-3 overexpression induces G1 arrest downstream of p53 by triggering a PI3K-Akt-activated negative feedback loop. Surprisingly, attenuation of Prl-3 expression also elicits an arrest response, suggesting that basal level Prl-3 expression is pivotal for normal cell-cycle progression. Our findings highlight key dose-dependent functions of Prl-3 in both positive and negative regulation of cell-cycle progression and provide insight into Prl-3's role in cancer progression.


Featured Topic

The existence of distinct chromatin domains at the cytological level has been apparent for many years. However, molecular analysis has revealed that heterochromatin, once thought to be exclusively “silent chromatin,” can be diverse and sometimes dynamic as exemplified in the following recent articles and FREE REVIEWS.

Facultative Heterochromatin: Is There a Distinctive Molecular Signature? *FREE REVIEW*
Patrick Trojer and Danny Reinberg

Oxymoron No More: The Expanding World of Heterochromatic Genes *FREE REVIEW* Trends in Genetics
Jiro C. Yasuhara and Barbara T. Wakimoto

Centromeres Put Epigenetics in the Driver’s Seat *FREE REVIEW* Trends in Biochemical Sciences
R. Kelly Dawe and Steven Henikoff

Transcription Termination and RNA Degradation Contribute to Silencing of RNA Polymerase II Transcription within Heterochromatin
Lidia Vasiljeva, Minkyu Kim, Nihal Terzi, Luis M. Soares, and Stephen Buratowski

Interplay of Chromatin Modifiers on a Short Basic Patch of Histone H4 Tail Defines the Boundary of Telomeric Heterochromatin
Mohammed Altaf, Rhea T. Utley, Nicolas Lacoste, Song Tan, Scott D. Briggs, and Jacques Côté

Sir2 Deacetylates Histone H3 Lysine 56 to Regulate Telomeric Heterochromatin Structure in Yeast
Feng Xu, Qiongyi Zhang, Kangling Zhang, Wei Xie, and Michael Grunstein

Active and Repressive Chromatin Are Interspersed without Spreading in an Imprinted Gene Cluster in the Mammalian Genome
Kakkad Regha, Mathew A. Sloane, Ru Huang, Florian M. Pauler, Katarzyna E. Warczok, Balázs Melikant, Martin Radolf, Joost H.A. Martens, Gunnar Schotta, Thomas Jenuwein, and Denise P. Barlow

Coupling of Double-Stranded RNA Synthesis and siRNA Generation in Fission Yeast RNAi
Serafin U. Colmenares, Shane M. Buker, Marc Buhler, Mensur Dlakić, and Danesh Moazed

Functional Separation of the Requirements for Establishment and Maintenance of Centromeric Heterochromatin
Janet F. Partridge, Jennifer L. DeBeauchamp, Aaron M. Kosinski, Dagny L. Ulrich, Michael J. Hadler, and Victoria J.P. Noffsinger

Downregulation of Wnt Signaling Is a Trigger for Formation of Facultative Heterochromatin and Onset of Cell Senescence in Primary Human Cells
Xiaofen Ye, Brad Zerlanko, Alyssa Kennedy, Gowrishankar Banumathy, Rugang Zhang, and Peter D. Adams

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