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May 9, 2008: 30 (3)

"DNA Damage Signals for p53 Pulses"
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DNA Polymerases at the Replication Fork in Eukaryotes
Bruce Stillman
[Summary] [Full Text] [PDF] 
259
Too Much of a Good Thing: The Prl-3 in p53's Oyster
Philip W. Hinds
[Summary] [Full Text] [PDF] 
260
SF2/ASF TORCs Up Translation
Martin Bushell, Mark Stoneley, Keith A. Spriggs, and Anne E. Willis
[Summary] [Full Text] [PDF] 
262
AMPK and Raptor: Matching Cell Growth to Energy Supply
D. Grahame Hardie
[Summary] [Full Text] [PDF] 
263
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Colocalization of Sensors Is Sufficient to Activate the DNA Damage Checkpoint in the Absence of Damage
Carla Yaneth Bonilla, Justine Amy Melo, and David Paul Toczyski
[Summary] [Full Text] [PDF] [Supplemental Data] 
267
Recurrent Initiation: A Mechanism for Triggering p53 Pulses in Response to DNA Damage
Eric Batchelor, Caroline S. Mock, Irun Bhan, Alexander Loewer, and Galit Lahav
[Summary] [Full Text] [PDF] [Supplemental Data] 
277
Cdc20 and Cks Direct the Spindle Checkpoint-Independent Destruction of Cyclin A
Rob Wolthuis, Lori Clay-Farrace, Wouter van Zon, Mona Yekezare, Lars Koop, Janneke Ogink, René Medema, and Jonathon Pines
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290
The Metastasis-Associated Gene Prl-3 Is a p53 Target Involved in Cell-Cycle Regulation
Shashwati Basak, Suzanne B.R. Jacobs, Adam J. Krieg, Navneeta Pathak, Qi Zeng, Philipp Kaldis, Amato J. Giaccia, and Laura D. Attardi
[Summary] [Full Text] [PDF] [Supplemental Data] 
303
Structures of DNA Polymerase β with Active-Site Mismatches Suggest a Transient Abasic Site Intermediate during Misincorporation
Vinod K. Batra, William A. Beard, David D. Shock, Lars C. Pedersen, and Samuel H. Wilson
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315
Microarray-Based Genetic Screen Defines SAW1, a Gene Required for Rad1/Rad10-Dependent Processing of Recombination Intermediates
Fuyang Li, Junchao Dong, Xuewen Pan, Ji-Hyun Oum, Jef D. Boeke, and Sang Eun Lee
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325
Regulation of Estrogen Receptor α by the SET7 Lysine Methyltransferase
Krithika Subramanian, Da Jia, Priya Kapoor-Vazirani, Doris R. Powell, Robert E. Collins, Dipali Sharma, Junmin Peng, Xiaodong Cheng, and Paula M. Vertino
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336
Coupling of Ribosomal L1 Stalk and tRNA Dynamics during Translation Elongation
Jingyi Fei, Pallav Kosuri, Daniel D. MacDougall, and Ruben L. Gonzalez
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348
Mechanism of Gate Opening in the 20S Proteasome by the Proteasomal ATPases
Julius Rabl, David M. Smith, Yadong Yu, Shih-Chung Chang, Alfred L. Goldberg, and Yifan Cheng
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360
To Trigger Apoptosis, Bak Exposes Its BH3 Domain and Homodimerizes via BH3:Groove Interactions
Grant Dewson, Tobias Kratina, Huiyan W. Sim, Hamsa Puthalakath, Jerry M. Adams, Peter M. Colman, and Ruth M. Kluck
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369
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Comprehensive Identification of PIP3-Regulated PH Domains from C. elegans to H. sapiens by Model Prediction and Live Imaging
Wei Sun Park, Won Do Heo, James H. Whalen, Nancy A. O'Rourke, Heather M. Bryan, Tobias Meyer, and Mary N. Teruel
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381
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On the cover: A major challenge of systems biology is to understand how network topology affects protein dynamics in living cells. Time-lapse movies of single cells revealed pulses of the tumor suppressor protein p53 in response to DNA damage, yet it is unclear how p53 pulses arise and what controls their shape and timing. To identify the crucial interactions required for p53 pulses, in this issue Batchelor et al. (277–289) combine quantitative experimental analysis of the p53 network with a predictive computational framework. They show that p53 pulses are driven by pulses in the upstream signaling kinases, ATM and Chk2, and that a negative feedback mediated by the phosphatase Wip1 is essential for maintaining the uniform shape of p53 pulses.

Featured Article

The Metastasis-Associated Gene Prl-3 Is a p53 Target Involved in Cell-Cycle Regulation
Shashwati Basak, Suzanne B.R. Jacobs, Adam J. Krieg, Navneeta Pathak, Qi Zeng, Philipp Kaldis, Amato J. Giaccia, and Laura D. Attardi
[Summary] [Full Text] [PDF] [Supplemental Data]
The p53 tumor suppressor restricts tumorigenesis through the transcriptional activation of target genes involved in cell-cycle arrest and apoptosis. Here, we identify Prl-3 (phosphatase of regenerating liver-3) as a p53-inducible gene. Whereas previous studies implicated Prl-3 in metastasis because of its overexpression in metastatic human colorectal cancer and its ability to promote invasiveness and motility, we demonstrate here that Prl-3 is an important cell-cycle regulator. Consistent with a role in DNA damage-induced cell-cycle arrest, Prl-3 overexpression induces G1 arrest downstream of p53 by triggering a PI3K-Akt-activated negative feedback loop. Surprisingly, attenuation of Prl-3 expression also elicits an arrest response, suggesting that basal level Prl-3 expression is pivotal for normal cell-cycle progression. Our findings highlight key dose-dependent functions of Prl-3 in both positive and negative regulation of cell-cycle progression and provide insight into Prl-3's role in cancer progression.